Web sites for Evolution. PhyloPic — Free Silhouette Images of Life Forms. Genomics. Web. TreeBASE is a repository of phylogenetic information, specifically user-submitted phylogenetic trees and the data used to generate them. TreeBASE accepts all types of phylogenetic data (e.g., trees of species, trees of populations, trees of genes) representing all biotic taxa.
Data in TreeBASE are exposed to the public if they are used in a publication that is in press or published in a peer-reviewed scientific journal, book, conference proceedings, or thesis. Data used in publications that are in preparation or in review can be submitted to TreeBASE but are only available to the authors, publication editors, or reviewers using a special access code. TreeBASE is produced and governed by the The Phyloinformatics Research Foundation, Inc. Some recent additions: <a href=" target="_blank">View RSS feed</a> CIRCOS Circular Genome Data Visualization. Exelixis Lab. Latest Topics - phylobabble. StratomeX — Institute for Computer Graphics and Vision. Demonstration Video of Caleydo StratomeX Caleydo StratomeX is a visualization technique for the analysis of multiple stratified datasets.
A good example for such an analysis scenario is the identification and characterization of cancer subtypes. Understanding subtypes is a precondition for refined therapeutic targeting which in turn is an important step towards improved patient outcomes. Recent research has shown that integrated analysis of different molecular data types generated by the TCGA project can be used to discover subtypes and suggest molecular differences relevant for therapeutic approaches. StratomeX can be used to explore the results of data analysis systems developed to perform analyses of TCGA data. StratomeX makes such analysis results easier accessible and requires no scripting. The core concept of our approach is to visualize stratifications (groupings) of samples (patients) and the relationships between these groupings in a given cancer type. Examples Donwload Help. Phylogeny Programs. Here are 392 phylogeny packages and 54 free web servers, (almost) all that I know about.
It is an attempt to be completely comprehensive. I have not made any attempt to exclude programs that do not meet some standard of quality or importance. Updates to these pages are made roughly monthly. Here is a "waiting list" of new programs waiting to have their full entries constructed. The programs listed below include both free and non-free ones; in some cases I do not know whether a program is free. Email addresses in these pages have had the @ symbol replaced by (at) and also surrounded by invisible confusing tags and blank characters in hopes of foiling spambots that harvest email addresses. If you discover any inaccuracies, or feel that I have left any important programs or facts out, or if links do not work properly, please e-mail me at: (joe (at) gs.washington.edu). ... by methods available ... by computer systems on which they work ... cross-referenced by method and by computer system.
World ancestry. ProjectEvoMap. OneZoom Tree of Life Explorer. Tree of Life Web Project. The Tree of Life Web Project (ToL) is a collaborative effort of biologists and nature enthusiasts from around the world. On more than 10,000 World Wide Web pages, the project provides information about biodiversity, the characteristics of different groups of organisms, and their evolutionary history (phylogeny).
Each page contains information about a particular group, e.g., salamanders, segmented worms, phlox flowers, tyrannosaurs, euglenids, Heliconius butterflies, club fungi, or the vampire squid. ToL pages are linked one to another hierarchically, in the form of the evolutionary tree of life. Starting with the root of all Life on Earth and moving out along diverging branches to individual species, the structure of the ToL project thus illustrates the genetic connections between all living things. TimeTree :: The Timescale of Life.