Hi Laksmi, It's not quite clear from your questoin, but do you want to do a pairwise alignment of each of your 90 sequences against a particular sequence (ie seq2[] v seq1 then seq2[] v seq1 in your example) or you want to do all the possible pairwsie comparisons between your 90 sequences. The first one is easy, use an apply function. pairwise sequence alignment with R
plot - R: multiple x axis with annotations
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Fitting polynomial model to data in R
The lattice package, written by Deepayan Sarkar, attempts to improve on base R graphics by providing better defaults and the ability to easily display multivariate relationships. In particular, the package supports the creation of trellis graphs - graphs that display a variable or the relationship between variables, conditioned on one or more other variables. The typical format is Trellis Graphs
g:Profiler - functional profiling of gene lists from large-scale experiments Welcome to g:GOSt!
Plus: a resource for protein phosphorylation and other post-translational modifications Protein, Sequence, or Reference Search: Protein Searches retrieve lists of proteins and their modification types based on protein name or ID, protein type, domain, cellular component, and MW range.
Worm Interactome Version 8
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SciRoKo Downloads SciRoKo is platform independent and runs in Windows, Linux and Mac OsX.
Protein, Sequence, or Reference Search
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European Bioinformatics Institute | Homepage
RCSB Protein Data Bank
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Overview Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses. Haploview
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