Hi Laksmi, It's not quite clear from your questoin, but do you want to do a pairwise alignment of each of your 90 sequences against a particular sequence (ie seq2[] v seq1 then seq2[] v seq1 in your example) or you want to do all the possible pairwsie comparisons between your 90 sequences. The first one is easy, use an apply function .
The lattice package, written by Deepayan Sarkar, attempts to improve on base R graphics by providing better defaults and the ability to easily display multivariate relationships. In particular, the package supports the creation of trellis graphs - graphs that display a variable or the relationship between variables, conditioned on one or more other variables. The typical format is
Welcome to g:GOSt!
Protein, Sequence, or Reference Search: Protein Searches retrieve lists of proteins and their modification types based on protein name or ID, protein type, domain, cellular component, and MW range.
Download and extract the appropriate Bowtie binary release into a fresh directory. Change to that directory. Performing alignments
SciRoKo is platform independent and runs in Windows, Linux and Mac OsX.
Block Maker at the Fred Hutchinson Cancer Research Center BlockS WWW server. WARNING: This page is no longer supported, use at your risk.
NOTICE: This version of CODEHOP is no longer maintained.
The program fastPHASE implements methods for estimating haplotypes and missing genotypes from population SNP genotype data. For more information:
Overview Haploview is designed to simplify and expedite the process of haplotype analysis by providing a common interface to several tasks relating to such analyses.
New to Artemis? Example of an Artemis screenshot.