Bioinformatics tools
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Bowtie: Tutorial
The Bowtie source and binary packages come with a pre-built index of the E. coli genome, and a set of 1,000 35-bp reads simulated from that genome. To use Bowtie to align those reads, issue the following command. If you get an error message "command not found", try adding a ./ before the bowtie .
GeneFisher2 Submission page
Enter the sequences of your project below. Your input can be a single or multiple sequence(s), either nucleotide or amino acid. For multiple sequences a multiple alignment will be calculated.perl
Block Maker at the Fred Hutchinson Cancer Research Center BlockS WWW server. Block Maker finds conserved blocks in a group of two or more unaligned protein sequences, which are assumed to be related, using two different algorithms.
Block Maker
CODEHOP
The input should be a set of local multiple alignments (blocks) of a group of related protein sequences.
Browse a Genome The Ensembl project produces genome databases for vertebrates and other eukaryotic species, and makes this information freely available online.
Genome Browser
The EMBL Nucleotide Sequence Database | EBI
The EMBL Nucleotide Sequence Database (also known as EMBL-Bank) constitutes Europe's primary nucleotide sequence resource.
European Bioinformatics Institute | Homepage | EBI
Rolf Apweiler and Ewan Birney have taken on the Associate Directorship of EMBL-EBI following the retirement of Graham Cameron.BioMart
BioMart Project The BioMart project provides free software and data services to the international scientific community in order to foster scientific collaboration and facilitate the scientific discovery process.
genome browsers
linux
The Gene Ontology
The Gene Ontology project is a major bioinformatics initiative with the aim of standardizing the representation of gene and gene product attributes across species and databases. The project provides a controlled vocabulary of terms for describing gene product characteristics and gene product annotation data from GO Consortium members, as well as tools to access and process this data . Read more about the Gene Ontology…About GeneCards®: GeneCards is a searchable, integrated, database of human genes that provides concise genomic related information, on all known and predicted human genes. The GeneCards human gene database extracts and integrates a carefully selected subset of gene related transcriptomic, genetic, proteomic, functional and disease information, from dozens of relevant sources.
GeneCards V3 - Human Genes | Gene Database | Gene Search
ExPASy Update - 2012-04-12