Networks

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Gephi, an open source graph visualization and manipulation software Applications Exploratory Data Analysis: intuition-oriented analysis by networks manipulations in real time. Link Analysis: revealing the underlying structures of associations between objects, in particular in scale-free networks.

Gephi, an open source graph visualization and manipulation software

NRNB and Cytoscape Introduction to the National Resource for Network Biology How to Cite Cytoscape Cytoscape project needs your support! Please cite either of the following papers when you use Cytoscape in your publications, which is very important to sustain our federal funding.

Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization

Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization
NodeXL: Network Overview, Discovery and Exploration for Excel

NodeXL: Network Overview, Discovery and Exploration for Excel

NodeXL is a free, open-source template for Microsoft® Excel® 2007, 2010 and 2013 that makes it easy to explore network graphs. With NodeXL, you can enter a network edge list in a worksheet, click a button and see your graph, all in the familiar environment of the Excel window. Visit the NodeXL Graph Gallery to see the wide variety of graphs that have been created by the NodeXL community. What's New