Visualisation
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Circular visualization Circos is a software package for visualizing data and information . It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. There are other reasons why a circular layout is advantageous, not the least being the fact that it is attractive. Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio , richly layered data and pleasant symmetries.
Circos - Circular Genome Data Visualization
Latest News January 2012. Our paper on Action Science Explorer was accepted by JASIST, the Journal of the American Society for Information Science and Technology.
Action Science Explorer (Formerly iOpener Workbench)
Cytoscape project needs your support! Please cite either of the following papers when you use Cytoscape in your publications, which is very important to sustain our federal funding. Melissa S Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R Pico, Aditya Vailaya, Peng-Liang Wang, Annette Adler, Bruce R Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J Warner, Trey Ideker & Gary D Bader
Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization
Cytoscape_3 - Cytoscape Wiki
This is the main entry page for software developer documentation for Cytoscape 3. Tutorials are hosted at Open Tutorials and are linked throughout these pages. Disclaimer: Dec.1.2011 - Cytoscape 3 is currently under active development. This means information about it may change from month to month. Thus, Cytoscape 3 documentation linked to from here and on the web may be out of date. As Cytoscape stabilizes, the Cytoscape core team will update this documentation and announce updates on the Cytoscape mailing list .
Overlay Toolkit | Interdisciplinary Research | Measuring and Mapping Interdisciplinary Research
Download this toolkit as a single zip-file | Also available at Loet Leydesdorff's webpage Appendix 1 to: Ismael Rafols , Alan L. Porter , and Loet Leydesdorff , “ Science overlay maps: a new tool for research policy and library management ,” in preparation We follow the method introduced in Rafols & Meyer (2010) to create the overlay map on the basis of a global map of science ( Leydesdorff & Rafols, 2009 ). The steps described below rely on access to the Web of Science and the files available in our mapping kit (also available at http://users.fmg.uva.nl/lleydesdorff/overlaytoolkit/ ). The objective is to obtain the set of SCs for a given set of articles; provide this to network software (we describe for Pajek ); and output as overlay information to add to a suitable basemap.
CiteSpace: visualizing patterns and trends in scientific literature
Chen, C. et al. (2010) The structure and dynamics of co-citation clusters: A multiple-perspective co-citation analysis . Journal of the American Society for Information Science and Technology . ( 10.1002/asi.21309 ) Chen, C. (2006) CiteSpace II: Detecting and visualizing emerging trends and transient patterns in scientific literature .
Micmac
L'analyse structurelle est un outil de structuration d'une réflexion collective. Elle offre la possibilité de décrire un système à l'aide d'une matrice mettant en relation tous les éléments constitutifs de ce système. Partant de cette description, cette méthode a pour objet, de faire apparaître les principales variables influentes et dépendantes et par là les variables essentielles à l'évolution du système. Description de la méthode L'analyse structurelle est réalisée par un groupe de travail composé d’acteurs et d’experts du domaine considéré, mais ceci n'exclut pas l'intervention de "conseils" externes.
*ORA is a dynamic meta-network assessment and analysis tool developed by CASOS at Carnegie Mellon. It contains hundreds of social network, dynamic network metrics, trail metrics, procedures for grouping nodes, identifying local patterns, comparing and contrasting networks, groups, and individuals from a dynamic meta-network perspective. *ORA has been used to examine how networks change through space and time, contains procedures for moving back and forth between trail data (e.g. who was where when) and network data (who is connected to whom, who is connected to where …), and has a variety of geo-spatial network metrics, and change detection techniques.
Projects - *ORA | CASOS
Tulip
Written in C++ the framework enables the development of algorithms, visual encodings, interaction techniques, data models, and domain-specific visualizations. One of the goal of Tulip is to facilitates the reuse of components and allows the developers to focus on programming their application. This development pipeline makes the framework efficient for research prototyping as well as the development of end-user applications.
If a picture is worth a thousand words, what is an interactive model of your organization, community, or industry worth? InFlow 3.1 performs network analysis AND network visualization in one integrated product -- no passing files back and forth between different programs like other tools. What is mapped in one window is measured in the other window -- what you see, is what you measure. InFlow excels at what-if analysis -- change the network, get new metrics -- just 2 clicks of the mouse. InFlow is designed to work with Microsoft Office and the WWW. You do not need to be an expert in statistics to use InFlow.
InFlow Social Network Analysis Software for Business, Communities and Government
NodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it easy to explore network graphs . With NodeXL, you can enter a network edge list in a worksheet, click a button and see your graph, all in the familiar environment of the Excel window. The latest version of NodeXL adds a word-pair counting feature for analyzing text, offers more control over dynamic filters, and improves the Twitter search network. See the Complete NodeXL Release History for details. Direct Connections to Social Networks Import social networks directly from Twitter, YouTube, Flickr and email, or use one of several available plug-ins to get networks from Facebook, Exchange and WWW hyperlinks. Zoom and Scale Zoom into areas of interest, and scale the graph's vertices to reduce clutter.
NodeXL: Network Overview, Discovery and Exploration for Excel
Toolkits
Gephi is an interactive visualization and exploration platform for all kinds of networks and complex systems, dynamic and hierarchical graphs. Latest News See All » Latest Forum Topics Bastian M., Heymann S., Jacomy M. (2009).
Gephi, an open source graph visualization and manipulation software
Gephi
VOSviewer is a freely available computer program that can be used for the following purposes: VOSviewer can be used to create maps based on network data. Maps are created using the VOS mapping technique and the VOS clustering technique. VOSviewer can be used to view and explore maps. It can show a map in various different ways, each emphasizing a different aspect of the map.