Visualisation

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Circular visualization Circos is a software package for visualizing data and information. It visualizes data in a circular layout — this makes Circos ideal for exploring relationships between objects or positions. There are other reasons why a circular layout is advantageous, not the least being the fact that it is attractive. Circos is ideal for creating publication-quality infographics and illustrations with a high data-to-ink ratio, richly layered data and pleasant symmetries.

Circos - Circular Genome Data Visualization

Circos - Circular Genome Data Visualization
Latest News January 2012. Our paper on Action Science Explorer was accepted by JASIST, the Journal of the American Society for Information Science and Technology.

Action Science Explorer (Formerly iOpener Workbench)

Action Science Explorer (Formerly iOpener Workbench)
Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization NRNB and Cytoscape Introduction to the National Resource for Network Biology How to Cite Cytoscape

Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization

Cytoscape_3 - Cytoscape Wiki Introduction This is the main entry page for software developer documentation for Cytoscape 3. Tutorials are hosted at Open Tutorials and are linked throughout these pages. Status of Cytoscape 3.x As of April 2013, Cytoscape 3.x is now the production version of Cytoscape. We encourage developers to use Cytoscape 3 for new application development. Cytoscape_3 - Cytoscape Wiki
All questions - Cytoscape - Shapado Beta -
Overlay Toolkit | Interdisciplinary Research | Measuring and Mapping Interdisciplinary Research Overlay Toolkit | Interdisciplinary Research | Measuring and Mapping Interdisciplinary Research Download this toolkit as a single zip-file | Also available at Loet Leydesdorff's webpage Appendix 1 to: Ismael Rafols, Alan L. Porter, and Loet Leydesdorff, “Science overlay maps: a new tool for research policy and library management,” in preparation We follow the method introduced in Rafols & Meyer (2010) to create the overlay map on the basis of a global map of science (Leydesdorff & Rafols, 2009). The steps described below rely on access to the Web of Science and the files available in our mapping kit (also available at http://users.fmg.uva.nl/lleydesdorff/overlaytoolkit/). The objective is to obtain the set of SCs for a given set of articles; provide this to network software (we describe for Pajek); and output as overlay information to add to a suitable basemap.

CiteSpace: visualizing patterns and trends in scientific literature

CiteSpace is a freely available Java application for visualizing and analyzing trends and patterns in scientific literature. It is designed as a tool for progressive knowledge domain visualization (Chen, 2004). It focuses on finding critical points in the development of a field or a domain, especially intellectual turning points and pivotal points. CiteSpace: visualizing patterns and trends in scientific literature
Maps of information flow reveal community structure in complex networks Martin Rosvall and Carl T. Bergstrom PNAS 105, 1118 (2008). [arXiv:0707.0609] To comprehend the multipartite organization of large-scale biological and social systems, we introduce a new information-theoretic approach to reveal community structure in weighted and directed networks. The method decomposes a network into modules by optimally compressing a description of information flows on the network. mapequation.org mapequation.org
Overview | People | Sponsors | Publications | Hardware Requirements | Software | Training & Sample Data *ORA is a dynamic meta-network assessment and analysis tool developed by CASOS at Carnegie Mellon. It contains hundreds of social network, dynamic network metrics, trail metrics, procedures for grouping nodes, identifying local patterns, comparing and contrasting networks, groups, and individuals from a dynamic meta-network perspective. Projects - *ORA | CASOS

Projects - *ORA | CASOS

InFlow Social Network Analysis Software for Business, Communities and Government Software for Social Network Analysis & Organizational Network Analysis If a picture is worth a thousand words, what is an interactive model of your organization, community, or industry worth? InFlow 3.1 performs network analysis AND network visualization in one integrated product -- no passing files back and forth between different programs like other tools. What is mapped in one window is measured in the other window -- what you see, is what you measure. InFlow excels at what-if analysis -- change the network, get new metrics -- just 2 clicks of the mouse. InFlow is designed to work with Microsoft Office and the WWW. InFlow Social Network Analysis Software for Business, Communities and Government
NodeXL: Network Overview, Discovery and Exploration for Excel NodeXL is a free, open-source template for Microsoft® Excel® 2007, 2010 and 2013 that makes it easy to explore network graphs. With NodeXL, you can enter a network edge list in a worksheet, click a button and see your graph, all in the familiar environment of the Excel window. Visit the NodeXL Graph Gallery to see the wide variety of graphs that have been created by the NodeXL community. What's New A new Import from Twitter Users Network feature in the latest release replaces two older Twitter importers that became less useful when Twitter introduced strict rate limits. NodeXL will now automatically update itself when a new release becomes available.

NodeXL: Network Overview, Discovery and Exploration for Excel

Social Networks Visualizer | Download Social Networks Visualizer software for free at SourceForge ★ 5.0 Stars (1) 103 Downloads (This Week) Last Update:
Toolkits

Applications Exploratory Data Analysis: intuition-oriented analysis by networks manipulations in real time. Link Analysis: revealing the underlying structures of associations between objects, in particular in scale-free networks. Social Network Analysis: easy creation of social data connectors to map community organizations and small-world networks. Biological Network analysis: representing patterns of biological data.

Gephi, an open source graph visualization and manipulation software

Gephi

VOSviewer is a freely available computer program that can be used for the following purposes: VOSviewer can be used to create maps based on network data. Maps are created using the VOS mapping technique and the VOS clustering technique. VOSviewer can be used to view and explore maps. It can show a map in various different ways, each emphasizing a different aspect of the map.

VOSviewer

Network Workbench Tool
visone
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