Data-mining PubMed tools
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The understanding of molecular level data in the context of high level pathophysiological processes is still a major challenge.
PubAnatomy
PubMed On Tap
E-mail the results as formatted text or an RIS tagged record, ready to be imported into reference management applications like Bookends and EndNote
Ali Baba helps you to search and visualize protein- and disease-centered information from PubMed .
Ali Baba — PubMed as a graph
BioMedLib™
The BioMedLib "Who is Publishing in My Domain?" journal integrates many types of information , such as free full-text articles, citations to your publications, funded research proposals, emerging authors, funding opportunities, and more.
Daily updates of search results via web feeds. Export citations in RIS, BibTeX, RDF and MODS formats, or directly to RefWorks. Unzip HubMed's import filter into Endnote's Filters folder for direct import into Endnote, or install the RIS Export plugin for direct import into ProCite, RefMan and older versions of Endnote.
HubMed
Search PubMed using words or even a DNA/protein sequence to create a tag cloud showing an overview of important concepts and trends. LigerCat aggregates multiple articles in PubMed, combining the associated MeSH descriptors into a cloud, weighted by frequency.
LigerCat
MEDSUM
MEDSUM is a free webtool that allows you to research and generate statistics on scientists, journals, and the biomedical literature itself. It is a live literature-summary interface, feeding directly off the current MEDLINE/PubMed database.
Pubfocus performs statistical analysis of the MEDLINE/PubMed search queries enriched with the additional information gathered from journal rank database and forward referencing database. PubFocus outputs basic statistical information on publication trends, publishing journals and most prolific authors including separate analysis of the first authors (commonly most contributing scientists) and last authors (commonly principal investigators). PubFocus also determines the quality of research activity for each author and identifies the authors with most impact based on a new algorithm for Author's Rank (AR) calculation.