Avi Ma’ayan. Opinion: Bioinformatics Software: A Buyer’s Guide. Bioinformatics. Map of the human X chromosome (from the NCBI website). Assembly of the human genome is one of the greatest achievements of bioinformatics. Bioinformatics i/ˌbaɪ.oʊˌɪnfərˈmætɪks/ is an interdisciplinary scientific field that develops methods for storing, retrieving, organizing and analyzing biological data.
A major activity in bioinformatics is to develop software tools to generate useful biological knowledge. Bioinformatics is a distinct science from biological computation, the latter being a computer science and computer engineering subfield using bioengineering and biology to build biological computers, whereas bioinformatics simply uses computers to better understand biology.
Introduction[edit] History[edit] Sequences. Genomes. Goals[edit] In order to study how normal cellular activities are altered in different disease states, the biological data must be combined to form a comprehensive picture of these activities. Approaches[edit] Major research areas[edit] Sequence analysis[edit] The Elements of Bioinformatics. A workflow for multi-omic data analysis - OMICtools. Vid - A History of Bioinformatics (in the Year 2039) CummeRbund - An R package for persistent storage, analysis, and visualization of RNA-Seq from cufflinks output. v2.0.0 -- Oct 2, 2012 1 Requirements2 Introduction3 CummeRbund Classes3.1 CuffSet Class3.2 CuffData Class3.3 CuffDist Class3.4 CuffFeatureSet Class3.5 CuffFeature Class4 Reading cuffdiff output4.1 Adding additional feature annotation5 Global statistics and Quality Control6 Accessing Data6.1 Writing your own SQL accessors7 Creating Gene Sets7.1 Geneset level plots8 Individual Genes8.1 Gene-level plots8.1.1 Gene Feature plots9 Data Exploration9.1 Overview of significant features9.2 Creating gene sets from significantly regulated genes9.3 Exploring the relationships between conditions9.3.1 Distance matrix9.3.2 Dimensionality reduction9.4 Partitioning9.5 Specificity9.6 Finding similar genes10 Miscellaneous11 Known Issues12 Session info 1 Requirements NOTE: cummeRbund 2.0 was designed in conjunction with the release of cufflinks 2.0. 2 Introduction cummeRbund is a visualization package for Cufflinks high-throughput sequencing data. 3 CummeRbund Classes 3.1 CuffSet Class 3.2 CuffData Class > cuff.
RSS news about Bioinformatics. Bioinformatics.ca Links Directory. The Bioinformatics Links Directory features curated links to molecular resources, tools and databases.
The links listed in this directory are selected on the basis of recommendations from bioinformatics experts in the field. We also rely on input from our community of bioinformatics users for suggestions. Starting in 2003, we have also started listing all links contained in the NAR Webserver issue. This category contains links to resources relating to programming languages often used in bioinformatics. Other tools of the trade, such as web development and database resources, are also included here.This category contains links to useful resources for DNA sequence analyses such as tools for comparative sequence analysis and sequence assembly. Translational Bioinformatics. Interviews — Big Data in BioMedicine Conference - Stanford University School of Medicine. Stephanie LeeSan Francisco Chronicle Joshua LoftusStanford Edward MarianoStanford/VA Jose MenaSanguchon Food Truck.
Translational Bioinformatics: Transforming 300 Billion Points of Data. Extinction of bioinformatics ? Google Trends - bioinformatics.
Software. Cheminformatics. News, journals, blogs, ... NGS data analysis. Miscellaneous.