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UncommonDistributions.java - Source Code Display - Jarvana

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Using Distributions to make a Gibbs sampler

Gibbs sampling is a statistical technique related to Monte Carlo Markov Chain sampling. It is used to search a solution space for an optimal (or at least locally optimal solution). It is an iterative technique. Basically, a single parameter is chosen at random and the value of it is set to a random value (or one chosen from a distribution). http://www.biojava.org/docs/bj_in_anger/gibbs.html
http://jgibblda.sourceforge.net/#2.1._Download JGibbLDA A Java Implementation of Latent Dirichlet Allocation (LDA) using Gibbs Sampling for Parameter Estimation and Inference http://jgibblda.sourceforge.net/ Copyright © 2008 by Xuan-Hieu Phan (pxhieu at gmail dot com), Graduate School of Information Sciences,

JGibbLDA: A Java Implementation of Latent Dirichlet Allocation (LDA) using Gibbs Sampling for Parameter Estimation and Inference

“Gibbs Sampling for the Uninitiated” for the Uninitiated | Corner Cases

Recently via Twitter I came across “ Gibbs Sampling for the Uninitiated ” by Philip Resnik and Eric Hardisty , a tutorial that shows how to use Gibbs sampling of a Naive Bayes model to estimate the labels on a set of documents. This paper goes through the algebra in great detail and concludes with pseudocode. Resnik and Hardisty do such a good job of making it look easy that I decided to write my own Gibbs sampler. It was, in fact, pretty easy. http://cornercases.wordpress.com/2011/10/06/gibbs-sampling-for-the-uninitiated-for-the-uninitiated/