Current Annotations. Poster_bielefeld.pdf (application/pdf Object) Benjamini_yekutieli_ANNSTAT2001.pdf (application/pdf Object) Supplement. DAVID: Database for Annotation, Visualization, and Integrated Discovery (Laboratory of Immunopathogenesis and Bioinformatics (LIB); National Institute of Allergies and Infectious Diseases (NIAID); Science Applications International Corporation (SAIC) The Gene Ontology. OBO Relation Ontology. An ontology of core relations for use by OBO Foundry ontologies OBO_REL is deprecated. This ontology has been replaced by RO, see the New project home page for details. This new ontology implements a number of changes announced on the obo-relations and BFO lists, including: Core domain-independent relations will live in BFO Biology specific relations (defined in terms of core relations) will live in RO This page will remain here as documentation of the original OBO_REL, but it should be understood as deprecated Reference Smith B, Ceusters W, Klagges B, Kohler J, Kumar A, Lomax J, Mungall CJ, Neuhaus F, Rector A, Rosse C Relations in Biomedical Ontologies.Genome Biology, 2005, 6:R46 Download Select format: [ OBO-Text Format | OBO-XML Format | OWL Format ] The native format is OBO; the OWL file is automatically derived from the OBO-XML Mappings and inter-ontology bridges Domain and range constraints using BFO are available (test release).
Summary Table Details is_a part_of integral_part_of located_in. GOAnno. Kihara Bioinformatics Laboratory, Purdue University. OpenHusar Main Window. b2g_tutorial_23062009.pdf (application/pdf Object) AutoFACT. AgBase GOanna. GOanna allows users to quickly add more GO annotations to their data by transferring GO annotations based on sequence homology. The input file is a text file containing either (1) protein accessions separated by a return/line break; or (2) a fasta file of either nucleotide or protein sequences. You will be notified by email when your GOanna results are ready. Please use the navigation provided by the webpage and not the browser back button.
Retrieve GOanna job status information by clicking here. Because searching the databases is time consuming, we limit GOanna to 5,000 inputs (accessions or sequences) or an overall file size of 6Mb. For very large jobs, please contact AgBase directly to assist you with your analysis For help using this tool click here. Note: Help with Affymetrix probe mapping is available here. GOtcha function prediction server. Supplementary [A universal Gene Ontology annotation, visualization and analysis tool for functional genomics research ]
Blast2GO® is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features are: Easy start up and low maintenance. Make sure you have JAVA, download Blast2GO from this site and start using the application. Updates are automatic. User-friendly. Blast2GO is designed for experimentalists. High-throughput and interactive. Blast2GO can annotate THOUSANDS of sequences in one session. Highly configurable. Blast2GO is a functional annotation workstation. Data mining. Blast2GO does not only generate functional annotations. Vocabularies. Gene Ontology, KEGG maps, InterPro and Enzyme Codes are supported by Blast2GO.