Canadian Bioinformatics Workshops | Bioinformatics.ca - Canadian Bioinformatics Workshops (CBW) R Reference Card Interpretome Load your genome file (upper-right corner) and choose some of the analyses above. Currently, only raw data files from 23andme and Lumigenix (unzipped) are supported. Sample genotype files (and a description of the individuals) can be found here. A detailed description of the website design and some of the modules can be found in our PSB paper as well as in blog posts here and here. Interpretome is intended for educational and research purposes only. No information should be considered diagnostic and as with any genetic testing service, the interpretation is not regulated by the FDA. How are my data kept private? Your genome will not be sent to any server, it remains on your computer. Your browser is NOT compatible with the Interpretome! Compatibility This website requires an HTML5 compatible browser, including current versions of: Google Chrome (≥ 6.0), the preferred browser Mozilla Firefox (≥ 4.0) Safari (≥ 6.0) RockMelt Citation Happy Exploring! -The interpreteam (About us)
Circos - Tutorials The tutorials serve as a walkthrough through Circos. The course is a more structured set of materials that takes you through creating an image from scratch. The tutorials act as documentation — each lesson presents a specific feature of Circos. Example Image Once you download and install Circos, > tar xvfz circos-x.xx.tgz > cd circos-x.xx try creating the example image that ships with the Circos core distribution. > cd example > . Creating a Tutorial Image You will need to download the tutorials separately. > cd tutorials/2/2 > ../../.. In each tutorial directory (e.g. tutorials/2/2), there will be several configuration files (*.conf). Creating Your Own Image The first thing you will need is the karyotype for your genome. You can download the karyotype from the table browser or directly for human hg19 (Feb 2009)hg18 (Mar 2006), mouse mm9 (Jul 2009)mm8 (Mar 2006), rat rn4 (Nov 2004)rn3 (Jun 2003), or other species.
BB 350 Oregon State University Schedule for BB 350 Ecampus (Note - this is the page for the ECAMPUS version of BB 350. The CLASSROOM version is different and should not be used by CLASSROOM students, nor should the ECAMPUS version be used by CLASSROOM students) The syllabus is required reading in this course. Technical Notes - You should use the YouTube videos for viewing and the iTunes U videos for downloading. You connect with iTunes U for OSU HERE. There are many songs sung on the lecture videos. This page has been replaced by a more recent version. Learning R BioSharing Papers - 1.9.4 [Intel] Papers 1.9.4 [Intel] | MacOS | 34.60 MB Papers · your personal library of research: Repository of knowledge, Search article repositories and download articles without leaving Papers, All your papers at a glance, Papers lets you view, browse and search your library, iTunes style. Smart groups. Collect your articles together or create smart groups that are always up to date. Features: * Import: Simply drag and drop your PDFs to import them into Papers, or import from Endnote or a BibTeX file. * Searching: Search through the world's largest article repositories direct from within Papers. * Collections: Organize your library by topic, project or anything else, with help of manual and smart collections Link for more information: DownloadHotfileFileServe
.NET Bio Summer 2010 — R: ggplot2 Intro Contents Intro When it comes to producing graphics in R, there are basically three options for your average user. base graphics I've written up a pretty comprehensive description for use of base graphics here, and don't intend to extend beyond that. Both and make creating plots of multivariate data easier. The website for ggplot2 is here: Basics is meant to be an implementation of the Grammar of Graphics, hence gg-plot. Plots convey information through various aspects of their aesthetics. x position y position size of elements shape of elements color of elements The elements in a plot are geometric shapes, like points lines line segments bars text Some of these geometries have their own particular aesthetics. points point shape point size lines line type line weight bars y minimum y maximum fill color outline color text label value The values represented in the plot are the product of various statistics. Layer by Layer Displaying Statistics
Welcome | bioontology.org The End Is Nigh -- For Computers, at Least [INFOGRAPHIC] When it comes to our gadgets, we live by Moore's law, which implies that as time goes by and tech gets better, the hardware we use gets smaller and more sophisticated. Now that we've whittled machines that filled whole rooms down to an MP3 player the size of a Triscuit, it's hard to say how much smaller our devices can get — but computing is continuing to evolve. In ten or twenty years, what we now call "computers" and how we do our computing are both guaranteed to be radically different and almost unrecognizable. In this REM-flavored infographic (which will surely get that song solidly stuck in your head for the rest of the day) we take a look at the progression of hardware from its beginnings in research to its future in quantum theory and even our own DNA. Click image to see full-size version. [source: OnlineComputerScienceDegree.com]
Bioinformatics Projects List November 10: Provide an outline of your work, as well as a preliminary list of references; Develop your presentation skills. The format of the projects is quite flexible. I foresee three types of work: 3) A review of the literature on a specific topic. For all three types of work, I would expect to see a review of the literature, sample data and a prototype implementation. Teams will be made of 1 to 4 members; the optimum being 2 persons per team. The project is worth 20% of your final mark. Predicting Cellular Localization. Other suggestions are welcomed. Consult the web sites of the major conferences in bioinformatics, many have their proceedings online. Consult the sites of the major journals.