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Phylogeny Programs

Here are 392 phylogeny packages and 54 free web servers, (almost) all that I know about. It is an attempt to be completely comprehensive. I have not made any attempt to exclude programs that do not meet some standard of quality or importance. Updates to these pages are made roughly monthly. Here is a "waiting list" of new programs waiting to have their full entries constructed. Many of the programs in these pages are available on the web, and some of the older ones are also available from ftp server machines. The programs listed below include both free and non-free ones; in some cases I do not know whether a program is free. Email addresses in these pages have had the @ symbol replaced by (at) and also surrounded by invisible confusing tags and blank characters in hopes of foiling spambots that harvest email addresses. ... by methods available ... by computer systems on which they work ... cross-referenced by method and by computer system. ... by ones which analyze particular kinds of data.

Related:  Mind Maps/Thinking Maps/Graphic Organizers

Tree of Life Explorer View your own data online Note that your data is only stored on your personal computer for this visualisation and is not transmitted over the internet so it is safe to visualise unpublished data in this way. If you prefer, you can still download OneZoom and do everyting locally and offline. Click here to load the single stand alone file version of OneZoom in a new window. This code is a slightly updated version of the supplementary material to the article in PLoS Biology. The code is also available for download as a zip in the downloads section of this page. Phylogenetic Analysis by Maximum Likelihood (PAML) Ziheng Yang Table of contents Introduction PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. us uses Neo4j’s graph database technology to offer you an easy solution to store, search and visualize your graphs. Visualize and explore graphs Neo4j user or looking for a way to visualize large scale graph data? Linkurious is the easiest way to explore and visualize networks. Install it on your machine and within minutes, you can start navigating inside your graph database. Search for properties, inspect nodes, and explore their relationships visually in your web browser.

Evolved Virtual Creatures : Free Download <div style="padding:5px; font-size:80%; width:300px; background-color:white; margin-left:auto; margin-right:auto; border:1px dashed gray;"> Internet Archive's<!--'--> in-browser video player requires JavaScript to be enabled. It appears your browser does not have it turned on. Please see your browser settings for this feature. NJplot NEW: NJplot plots trees in PDF and PostScript formats (not for MacOS). NEW: NJplot allows to open several tree windows. NEW: NJplot can draw multibranched trees with or without branch lengths. NJplot is a tree drawing program able to draw any phylogenetic tree expressed in the Newick phylogenetic tree format (e.g., the format used by the PHYLIP package).

Large-scale RDF Graph Visualization Tools AI3 Assembles 26 Candidate Tools The pending UMBEL subject concept “backbone” ontology will involve literally thousands of concepts. In order to manage and view such a large structure, a concerted effort to find suitable graph visualization software was mounted. This post presents the candidate listing, as well as some useful starting resources and background information. Oldest living rabbit-world record set by Hazel Oldest living rabbit-world record set by Hazel NORFOLK, UK -- Hazel, a16-year-old miniature grey rabbit (owners, Mike and Irene Womack, of Chapel Close, Pulham Market) sets the world record for being the Oldest living rabbit. Rabbits normally live between six and eight years. The oldest bunny alive on record until last year was George, who was born in March 1994 and was owned by a couple in Massachusetts, USA. He was declared the oldest living rabbit in the world after several vets confirmed his age as 14 years, as of March 13, 2008. The oldest rabbit ever on record was a wild rabbit named Flopsy, who was caught on August 6, 1964, and died 18 years and 10.75 months later in Tasmania, Australia. Saturday, March 7, 2009 Related world records: Biggest rabbit-world record set by Herman the giant rabbit Oldest Dog-world record set by Chanel

The Method - Information Mapping Information Mapping® is a research-based method used to analyze, organize and present information based on your audience’s needs and the purpose of the information. Introduction video Organizational challenges Poorly written documentation, training, memos, reports and emails can cause significant problems for organizations. Reader and writer challenges

The Anatomy Of An Infographic: 5 Steps To Create A Powerful Visual Information is very powerful but for the most bit it is bland and unimaginative. Infographics channel information in a visually pleasing, instantly understandable manner, making it not only powerful, but extremely beautiful. Once used predominantly to make maps more approachable, scientific charts less daunting and as key learning tools for children, inforgraphics have now permeated all aspects of the modern world. Desktop This software has been renamed to Gapminder World Offline Because of technical problems the software on this page is no longer being maintained! Please visit Gapminder World Offline (Beta) instead. Gapminder Desktop With Gapminder Desktop you can show animated statistics from your own laptop! Install the free software and watch the how-to video with Hans Rosling.

Infographic: 14 best practices for advanced mind maps Jul 25th, 2013 | By Chuck Frey | Category: Resources So you’ve invested in mind mapping software and have created some basic visual diagrams with it. What’s next? You need to learn how to use its more advanced capabilities, because they’re the key to getting the majority of of the business value out of it. This infographic (click on the image above to view the full version) summarizes 14 best practices for utilizing the deep capabilities of mind mapping software – from tasks and linked documents to callouts and boundaries, knowing how to use these elements correctly is critically important, especially if you plan to share your mind maps with others.

Over 100 Incredible Infographic Tools and Resources (Categorized) This post is #6 in DailyTekk’s famous Top 100 series which explores the best startups, gadgets, apps, websites and services in a given category. Total items listed: 112. Time to compile: 8+ hours. Follow @DailyTekk on Twitter to make sure you don’t miss a week! Update: Be sure to check out our latest post on infographics: Infographics Are Everywhere – Here’s How to Make Yours Go Viral. I love a good infographic!

Cell Models: An Interactive Animation Nucleolus: The prominent structure in the nucleus is the nucleolus. The nucleolus produces ribosomes, which move out of the nucleus and take positions on the rough endoplasmic reticulum where they are critical in protein synthesis. Cytosol: The cytosol is the "soup" within which all the other cell organelles reside and where most of the cellular metabolism occurs. Though mostly water, the cytosol is full of proteins that control cell metabolism including signal transduction pathways, glycolysis, intracellular receptors, and transcription factors. Cytoplasm: This is a collective term for the cytosol plus the organelles suspended within the cytosol.