Is Just ImageJ Fiji is an image processing package. It can be described as a distribution of ImageJ (and ImageJ2) together with Java, Java3D and a lot of plugins organized into a coherent menu structure. Fiji compares to ImageJ as Ubuntu compares to Linux. The main focus of Fiji is to assist research in life sciences. For users, Fiji is easy to install and has an automatic update function, bundles a lot of plugins and offers comprehensive documentation. For developers, Fiji is an open source project hosted in a Git version control repository, with access to the source code of all internals, libraries and plugins, and eases the development and scripting of plugins. Download Fiji now List of Update sites How to cite Fiji? Collaboration The Fiji project is driven by a strong desire to improve the tools available for life sciences to process and analyze data. News Subscribe to an RSS or Atom feed of the Fiji news. Browse the news archive. Documentation Using Fiji Advanced Fiji usage Developing for Fiji Projects ImgLib2
ImageTool UTHSCSA ImageToolVersion 3.0 Final is Here Overview What is ImageTool? UTHSCSA ImageTool (IT) is a free image processing and analysis program for Microsoft Windows 9x, Windows ME or Windows NT. ImageTool was designed with an open architecture that provides extensiblity via a variety of plug-ins. ImageTool now has a complete scripting language built into the application. ImageTool provides for geometric transformations such as rotate, flip vertical, flip horizontal and magnification up to four levels. Spatial calibration is available to indicate real world dimensional measurements such as millimeters, microns, feet, miles, etc. for linear and area. ImageTool now provides for image annotation with text, arrows, rectangle, ellipses and polygon. ImageTool is in final release 3.0, we would appreciate any bug reports and suggestions to improve IT as a tool for imaging research. System Requirements Acknowledgements
SCIRun First, the original source of the geometry was MRI, as you have read. However, our interest in the bone data came later, and they were not visible enough in the MRI to extract from there. Instead, we acquired standardized rib and spine geometry and fit them to the torso model. With that said, there is considerable variation among patients with regard to heart shape and even location. Finally, gating to the R wave does not ensure systole in the images of the heart for several reasons. I hope that, with this information, you can see that the Utah torso geometry can, indeed, be trusted to reasonably representthe geometry of an adult human torso. We use XML-based .srn (SCIRun Network) files. The relative path support in the SCIRun network fields assumes the following: The SCIRun network files are located at a fixed relative location from the data. When this variable is set all filenames are exported in a relative fashion. To convert files, set the variable in the .scirunrc file.
Seg3D Build Machine Requirements To build Seg3D on Windows, you will need a 64-bit Windows machine, running Visual Studio 2008. You should also have CMake 2.8.5 or greater installed. Building Qt Installing Qt on Your System and Building from Scratch Download the open source version of Seg3D2. Building 32-bit and 64-bit Seg3D Most likely, both 64-bit and 32-bit Qt have been installed on the same system. In the Control Panel select System and go to Advanced Settings. Xcode 4.x Xcode installers from 4.3 onward do not install command line tools by default, but they can be installed after the main Xcode package has been installed. Possible CMake Issues on OS X 10.7 (Lion) The following warning may be seen while trying to configure a CMake project on OS X Lion: xcode-select: Error: No Xcode folder is set. To fix the error, the following should work: sudo /usr/bin/xcode-select -switch /Applications/Xcode.app/Contents/Developer/ Seg3D 2.1.5 and greater includes LaTeX documentation. Requirements Qt cmake .. .