Programming

TwitterFacebook
Get flash to fully experience Pearltrees
http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual R & Bioconductor Manual R Basics Introduction

R & Bioconductor - Manuals

NG Sequence - Manuals

http://manuals.bioinformatics.ucr.edu/home/ht-seq Introduction Sequencing Technology Slide Show
http://www.cookbook-r.com/Graphs/Legends_(ggplot2)/

Cookbook for R » Legends (ggplot2)

This page was recently updated to reflect changes in the new version of ggplot2, 0.9.3.

Cookbook for R » Colors (ggplot2)

http://www.cookbook-r.com/Graphs/Colors_(ggplot2)/ This page was recently updated to reflect changes in the new version of ggplot2, 0.9.3.
http://www.ebi.ac.uk/arrayexpress/help/programmatic_access.html

ArrayExpress Query Help - Programmatic Access

1. REST-style queries to retrieve results in XML format 1.1. Keyword searches for experiments and data files 1.2. Specifing particular fields for searching 1.3. Expanding searches using the Experimental Factor Ontology 1.4. Construction of queries using AND, OR and NOT operators 1.5.
http://cran.r-project.org/web/views/Graphics.html R is rich with facilities for creating and developing interesting graphics. Base R contains functionality for many plot types including coplots, mosaic plots, biplots, and the list goes on.

CRAN Task View: Graphic Displays & Dynamic Graphics & Graphic Devices & Visualization

R & Bioconductor - Manuals

http://manuals.bioinformatics.ucr.edu/home/R_BioCondManual#CLUSTERBACK ( Slide Show ) R contains many functions and libraries for clustering of large data sets.
http://www.statmethods.net/advstats/bootstrapping.html Nonparametric Bootstrapping

Bootstrapping

The Microsoft Biology Foundation (MBF) is a language-neutral bioinformatics toolkit, built as an extension to the Microsoft .NET Framework, and initially aimed at the area of Genomics research. On this page, you can find slides and hands-on labs to help you get started with MBF.

Biology Foundation Training

http://research.microsoft.com/en-us/projects/bio/training.aspx
Welcome to the ' R' programming Wikibook This book is designed to be a practical guide to the R programming language [1] . R is free software designed for statistical computing.

R Programming

This CRAN Task View contains a list of packages that can be used for finding groups in data and modelling unobserved cross-sectional heterogeneity.

CRAN Task View: Cluster Analysis & Finite Mixture Models