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http://public.kitware.com/VTK/ ParaView is an open-source, multi-platform data analysis and visualization application. ParaView was developed to analyze extremely large datasets using distributed memory computing resources. It can be run on supercomputers to analyze datasets of terascale as well as on laptops for smaller data.

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Parallel coordinates - Wikipedia, the free encyclopedia

Parallel coordinates is a common way of visualizing high-dimensional geometry and analyzing multivariate data . To show a set of points in an n -dimensional space , a backdrop is drawn consisting of n parallel lines, typically vertical and equally spaced. A point in n -dimensional space is represented as a polyline with vertices on the parallel axes; the position of the vertex on the i th axis corresponds to the i th coordinate of the point. http://en.wikipedia.org/wiki/Parallel_coordinates
We have spent many months working on Dendroscope 3, with the aim of providing a tool that makes it easy to work with multiple trees simultaneously. Moreover, we hope to develop Dendroscope into a plattform for computing and working with rooted phylogenetic networks. We are currently writing a paper that describes the new program and we will officially release the program once the paper is published. Researchers studying phylogenetic relationships need software that is able to visualize rooted phylogenetic trees and networks efficiently, increasingly of large datasets involving hundreds of thousands of taxa. The program should be user friendly (easy to run on all popular operating systems), facilitate interactive browsing and editing the trees and allow one to export the result in multiple file formats in publication quality. Use of the program requires a license. http://www-ab.informatik.uni-tuebingen.de/software/dendroscope/welcome.html

Tübingen University: Algorithms in Bioinformatics: Dendroscope