Tools
Get flash to fully experience Pearltrees
mfold Web Server
The UNAFold web server is currenly an amalgamation of two existing web servers: mfold & DINAMelt. The aim of this web site is to integrate the existing servers and to expand by developing algorithms and software that will provide new services to the scientific community. Created by Nicholas R. Markham Andrew Wright Leslie S. Zuker Michael Zuker Maintained and supported by Paul F. Agris Eric E.
GeneMark™ - Free gene prediction software
The GeneMark-P and GeneMark-E programs determine the protein-coding potential of a DNA sequence (within a sliding window) by using species specific parameters of the Markov models of coding and non-coding regions. This approach allows deliniating local variations of coding potential, therefore, the GeneMark graph shows details of the protein-coding potential distribution along a sequence. GeneMark is documented as the most accurate prokaryotic gene finder. GeneMark.hmm-P and GeneMark.hmm-E programs are predicting genes and intergenic regions in a sequence as a whole.
This page lists all biological software that has been developed by Ben Stöver and Kai Müller . Note that this list also contains programs which have been replaced by extended projects we started later on. TreeGraph 2 TreeGraph 2 is a graphical editor for phylogenetic trees which allows you to apply lots of graphical formats to the elements of your tree.
Software
ApE- A plasmid Editor
Gatekeeper will report that the application is damaged and will prevent ApE from running. You have to go to System Preferences > Security and Privacy > General. Check "Allow software downloaded from anywhere" to allow ApE to run. Appearntly, right click on ApE and select "Open" will not work to bypass Gatekeeper on all systems. Or use a command line function to change the quarantine attributes.
ApE-A-plasmid-Editor - How do I do...?
Ask specific questions on how to do specific tasks in ApE Hi Is there a way to adjust the linear map settings? I am trying to annotate a large Transposon and would like the map to wrap on the page instead of just being all scrunched together and not able to read. Thanks In the enzymes menu of the sequence, you can set to "Selection only", then you can do a graphic map of sections at a time.