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Données libérées, chercheurs débridés, société impliquée » Article » OwniSciences, Société, découvertes et culture scientifique
Jusqu’à très récemment, les données étaient les parents pauvres de la recherche scientifique, particulièrement en biologie. S’accumulant dans les laboratoires et les centre de séquençage du génome, isolées sur le disque dur des chercheurs, elles étaient invisibles et difficilement accessibles — enfouies sous la montagne d’articles scientifiques auxquels elles contribuent à donner naissance.
Il faut gérer publiquement les données scientifiques » Article » OwniSciences, Société, découvertes et culture scientifique
L'organisation de la publication des données scientifiques est importante pour rendre plus simples les vérifications mais aussi et surtout pour sauver les données qui ne sont pas reproductibles. Andre Vellino est chercheur au NRC Canada Institute for Scientific and Technical Information et professeur invité à l’ École de l’Information de l’Université de Ottawa . Les données de recherches scientifiques sont sans nul doute un composant central du cycle de vie de la production de la connaissance.Using Google Refine and taxonomic databases (EOL, NCBI, uBio, WORMS) to clean messy data
Google Refine is an elegant tool for data cleaning. One of its most powerful features is the ability to call "Reconciliation Services" to help clean data, for example by matching names to external identifiers. Google Refine comes with the ability to use Freebase reconciliation services, but you can also add external services. Inspired by this I've started to implement services to reconcile taxonomic names. To use these you need to add the URLs above to Google Refine (see example below).
Affiliations Caroline E. Shamu is at the ICCB-Longwood Screening Facility, Harvard Medical School, 250 Longwood Avenue, Boston, Massachusetts 02115-5731, USA Stefan Wiemann is at the Division of Molecular Genome Analysis and Genomics & Proteomics Core Facility, German Cancer Research Center (DKFZ), Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany Michael Boutros is at the Division of Signaling and Functional Genomics, German Cancer Research Center (DKFZ) and Department of Cell and Molecular Biology, Heidelberg University, Medical Faculty, Mannheim, D-69120 Heidelberg, Germany
On target: A public repository for large-scale RNAi experiments : Nature Cell Biology : Nature Publishing Group
FGED: Home
FGED Accelerating Scientific Progress Through Public Availability of Research Data storify.com/natnetnews/acc… #aaasmtg #opendata on #storify 9 hours ago · reply · retweet · favorite
Dryad is an international repository of data underlying peer-reviewed articles in the basic and applied biosciences. Dryad enables scientists to validate published findings, explore new analysis methodologies, repurpose data for research questions unanticipated by the original authors, and perform synthetic studies. Dryad is governed by a consortium of journals that collaboratively promote data archiving and ensure the sustainability of the repository.
Dryad Home
The unlimited scholarly publication
As we have previously noted , traditional journals often have limits on the number of files that you can put into the paper, even as supplemental information.The use of figshare to break open the restraints of current traditional publishing models has been demonstrated this week in a publication in PLoS ONE: Roberts SB, Hauser L, Seeb LW, Seeb JE (2012) Development of Genomic Resources for Pacific Herring through Targeted Transcriptome Pyrosequencing. PLoS ONE 7(2): e30908. doi:10.1371/journal.pone.0030908
figshare , an open data project with the ultimate intention to enable and encourage users to share all of their data whether published, unpublished or containing negative results, relaunched in the last 24 hours. What impact does its founder Mark Hahnel hope it achieves? Here Mark explains the new features of the site, how it will harness social media and ultimately offer an alternative for scholarly publishing. In 1990, Tim Berners-Lee created the Web as a tool for scholarly communication at CERN.
Exclusive: figshare a new open data project that wants to change the future of scholarly publishing | Impact of Social Sciences
We have conducted a study on the long-term availability of bioinformatics Web services: an observation of 927 Web services published in the annual Nucleic Acids Research Web Server Issues between 2003 and 2009. We found that 72% of Web sites are still available at the published addresses, only 9% of services are completely unavailable. Older addresses often redirect to new pages. We checked the functionality of all available services: for 33%, we could not test functionality because there was no example data or a related problem; 13% were truly no longer working as expected; we could positively confirm functionality only for 45% of all services.
PLoS ONE: Persistence and Availability of Web Services in Computational Biology
Home :: Open Access Map
Please fill out the fields below to submit your resource or organization to the database.Open Access Map Launched | InTechWeb Blog
In November last year, the Open Access Map was presented as an emerging measuring tool for Open Access as a standalone discipline which is experiencing dramatic growth.Welcome - Open Data Search
Datasets for http://www.datadotgc.ca/.The following post is from Friedrich Lindenberg , who is a developer at the Open Knowledge Foundation working on CKAN , PublicData.eu and Open Spending . Recently, there has hardly been a week in which there hasn’t been an announcement of a new local, regional or national open data initiative – including ever more extensive catalogues of data that is being opened up ( CKAN alone now runs in 20 or more places).
Open Knowledge Foundation Blog » Blog Archive » Open Data Search: finding useful datasets, worldwide
Welcome to the Registry of Open Access Repositories - Registry of Open Access Repositories
The aim of ROAR is to promote the development of open access by providing timely information about the growth and status of repositories throughout the world.Open Repositories
Repositories increasingly play a pivotal role in the emerging information landscape.Données de la recherche
Open Data
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