Networks
< Visualization Tools
< fossilfriend
Get flash to fully experience Pearltrees
Recently Tony (Hirst) tipped me off about a new viewer for Gephi graphs. Developed by Raphaël Velt it uses JavaScript to parse Gephi .gefx files and output the result on a HTML5 canvas. The code for the viewer is on github available under a MIT license if you want to download and remash, I’ve also put an instance here if you want to play .
KGML-ED allows the dynamic exploration and editing of KEGG Pathway diagrams. It is a graphical network editor, that provides read- and write-support for the KGML (KEGG Markup Language) file format. Pathway files are loaded and transformed into a graph network which may be modified to fulfill user-specific needs (e.g. it is possible, to delete or add network elements, change labels and colors). (1) The navigation from overview to detail (construct a pathway overview and integrate/load selected pathways into the view). (2) The exploration of related pathways by integrating referenced pathway maps into the current view with a double-click onto a map reference node. A hierarchical layout makes it possible to place different pathways at the desired positions in the graphical network-view and layout each pathway similar to the KEGG Pathway layout.
