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Databases

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Public Databases for Bioinformatics Resources

Networks and Pathways

Mouse. Betacell.org. BCBC Genomics. RAD. RAD, as originally described, provided a schema and approach to capturing functional genomics data primarily aimed at measuring transcript abundance. An implementation of RAD was set up to provide access to studies by CBIL collaborators as well as show off features of RAD. Due to changes in technology and funding, the RAD website is no longer available (a historical description is provided below).

RAD as a schema is still very much active and incorporated in the GUS (Genomics Unified Schema) database system used by CBIL (EuPathDB, Beta Cell Genomics) and others. The schema for RAD can be viewed along with the other GUS namespaces through our Schema Browser. The RAD web site was a resource for gene expression studies, storing highly curated MIAME-compliant studies (i.e. experiments) employing a variety of technologies such as filter arrays, 2-channel microarrays, Affymetrix chips, SAGE, MPSS and RT-PCR. EuPathDB. PlasmoDB : The Plasmodium genome resource.

PWMs

NCBI Entrez. ArrayExpress Home.