2013 Workshop on Genomics, Cesky Krumlov. An excellent series of blog posts about the 2013 Workshop on Genomics written by Melanie Melendrez from Walter Reed Army Institute of Research can be viewed on her site found here!
T he 2013 Workshop on Genomics was held from 7-18 January, 2013 in Český Krumlov, Czech Republic. This will be the third time the Workshop will be held in Europe, and the fifth full-length Workshop on Genomics. A full schedule can be viewed below. Modifications and additions to the schedule may be made at anytime prior to the beginning of the Workshop, however the overall content and structure will remain largely the same. The Workshop on Genomics was developed in response to the increasing demand for training on how to effectively analyze and manage data generated by modern sequencing technologies. The Workshop registration fee is $1800. Map of important locations: Workshop Guide. Information from the Infocentrum about activities, dining and other information can be found here. Software - Bioinformatics Team (BioITeam) at the University of Texas. Software The following is a categorized list of software available through the UT GSAF and/or TACC's life sciences group.
Each page lists a summary of the software, the hardware it is currently installed on, links to user documentation, and helpful tips. Many of these are available via the TACC module system (use module keyword or module spider to search). The current listing of modules and versions available on Lonestar is also posted here. In addition, the BioITeam maintains executables in /corral-repl/utexas/BioITeam/bin; we advise adding this directory to your path.
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CS 680 Homepage. Instructor: Christina Boucher Office: 344 Computer Science Building Office Hours: 10:45-noon on Thursdays or by request.
Email: cboucher at cs.colostate dot edu. Biostatistics 615/815: Main Page - Genome Analysis Wiki. Biostatistics 666: Main Page - Genome Analysis Wiki. Kevin's GATTACA World. Teaching - Oxford University Statistics. We teach computational biology, systems biology, comparative genomics and population genetics at DTC LSI and DTC Sysbio and MSc Bioinformatics, a 4th year course in the Department of Statistics and Comlab called 'Bioinformatics and Computational Biology.
Lectures, exercises, practicals and projects can be downloaded from the corresponding webpages where, in the Dept Statistics, we have taught: FASTX-Toolkit. Introduction The FASTX-Toolkit is a collection of command line tools for Short-Reads FASTA/FASTQ files preprocessing.
Next-Generation sequencing machines usually produce FASTA or FASTQ files, containing multiple short-reads sequences (possibly with quality information). The main processing of such FASTA/FASTQ files is mapping (aka aligning) the sequences to reference genomes or other databases using specialized programs. Example of such mapping programs are: Blat, SHRiMP, LastZ, MAQ and many many others. However, It is sometimes more productive to preprocess the FASTA/FASTQ files before mapping the sequences to the genome - manipulating the sequences to produce better mapping results. The FASTX-Toolkit tools perform some of these preprocessing tasks. Untitled. Bioinformatics challenges developers to create widely distributable tools that elucidate biological relationships.
The principal value of these tools is measured in the contribution they provide to research biologists. Furthermore, as the amount and nature of available data increases, bioinformaticians are forced to provide rapidly evolving tools to their user communities. EBI Train online. Bioinformatics Webinar/Seminar. ECS124 Bioinformatics. Notes on Substitution matrices - PAM and BLOSUM [ Substitution matrices] More Class Notes, Posted 2006 [ Notes on aligning a string to a profile] More Class Notes, Posted 2008 [ Notes from the May 6, 2008 lecture - rant on how to misuse probability] Class Notes for Professor Koehl's LectureMay 15, 2008 [ Koehl May 15, 2008]
Daniel M. Gusfield. Perl for Bioinformatics and Internet. Resources ¦ Computational and Evolutionary Biology (Faculty of Life Sciences – The University of Manchester) The following list contains links to the on-line resources provided by our research group.
Should any of the links be broken or for general enquiries please contact: bioinformatics-webmaster@manchester.ac.uk Please refer to the following web pages for information regarding the Principal investigators and their research interests. Databases. Royal Society. Bioinformatics Tutorials,Bioinformatics Online Tutorials,Bioinformatics Tutorial Guide. Bioinformatics Training Network. Welcome to Rost lab: Overview. Tutorials. Ensembl Login/Register More ▼
Bioinformatics.ca.
Pharmbio. Bioinformatics Courses and Lectures. Webinars. NIH VideoCast - Search. General Search Instructions Enter a term in the "Search" box, and then click "Go. " Results appear. To search within the results, make sure the "Search Within These Results" option is selected, enter another search term, and click "Go. " As you search for terms, they become filters and appear in the "Query Refinements Applied" section. To remove filters click the red "x" next to the term you want to delete. To clear results and query refinements and begin a new search, click the "Search" tab.
Filter By Category To sort results by Videocast categories, search for a term then select an option from the "Filter By Category" section such as "Advisory Boards" or "Conferences. " Most Common Terms When you search for a term, related terms and phrases appear in the "Most Common Terms" section.
University of Illinois Crop Sciences > Matt Hudson Lab > Bioinformatics&Plant Genomics > CPSC 565: Perl and Unix for Bioinformatics. CPSC 565: Perl and Unix for Bioinformatics (syllabus) Perl and UNIX: Lecture 1, introduction to UNIX (powerpoint file) Perl and UNIX: Lecture 2, UNIX for bioinformatics (powerpoint file) Search VideoLectures for Bioinformatics. Welcome to ANGUS! — ANGUS 2.0 documentation. Note These tutorials are checked at the time of posting, but many are now quite old and out of date. The GED Lab does maintain a set of up-to-date tutorials on sequence analysis, the khmer protocols, which may cover similar topics. Bioinformatics Tutorials.
August 10th, 2009 by Kristi · 1 Comment There are a number of great tutorials on the web for bioinformatics-related applications and topics. Here are a few that I’ve run across. Are there any missing? Feel free to add any that I might have left out in the ‘comments’ section! BioInformatics Tutorials Series (BITS) from Countway Library of Medicine at Harvard and the Engineering and Science Libraries at MIT by Paul Bain, Courtney Crummett and David Osterbur. Microarray Analysis: 2007. Institute for Mathematics and its Applications (IMA) - PROGRMAS/ACTIVITIES.
Probability and Statistics in Complex Systems: Genomics, Networks, and Financial Engineering, September 1, 2003 - June 30, 2004 Organizers: Michael A. Medar - media archive. EDU @ isb-sib.ch. List of free tutorials. What are the best bioinformatics course materials and videos (available online)? Tobias Rausch.